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The Ultimate Guide to Payroll: Preparation, Calculation, and Accounting in Africa

Processing payroll is a critical function for any business, regardless of size or industry, serving as the lifeblood of a company that ensures financial and operational stability. It involves compensating employees for a specific period and on a particular date, encompassing tasks such as preparing payroll...

Workpay
August 22, 2025
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August 22, 2025
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The Ultimate Guide to Payroll: Preparation, Calculation, and Accounting in Africa

Processing payroll is a critical function for any business, regardless of size or industry, serving as the lifeblood of a company that ensures financial and operational stability. It involves compensating employees for a specific period and on a particular date, encompassing tasks such as preparing payroll, calculating wages, and withholding taxes and other deductions. For businesses operating in Africa's rapidly growing landscape, understanding the intricacies of payroll, from preparation and calculation to accounting, is essential for sustainable scaling and maintaining employee morale.

Understanding Payroll Basics

Payroll is about more than just issuing pay slips and paychecks; it fosters trust, enhances loyalty between employers and employees, and ensures that everyone is paid correctly and on time. An effective and error-free payroll process is fundamental to a business's success.

Why is Payroll Important?

  • Compliance: Businesses must comply with tax regulations and labor laws, accurately paying employees and remitting all tax deductions to avoid fines and legal penalties.
  • Time-Saving: Modern payroll software and automated systems reduce the time and effort spent on managing payroll, allowing companies to focus on productivity and growth.
  • Talent Retention: Timely and accurate employee remuneration boosts job satisfaction and morale, reducing employee turnover and helping businesses retain top talent.
  • Risk Mitigation: Entrusting payroll processes to dedicated professionals or automated systems reduces the chances of costly errors, ensuring accuracy and compliance.
  • Company Reputation: Paying employees on time and accurately helps maintain a positive company image, which is crucial for attracting and retaining talent.

Is Payroll a Human Resource or Accounting Function? Payroll touches both Human Resources (HR) and Accounting departments.

  • HR's role involves overseeing the process of paying workers for their labor, ensuring employees receive salaries on time, and handling calculations, deductions, and withholdings. Employees typically approach HR regarding payment errors or queries.
  • Accounting's role involves all financial transactions related to employee salaries, including recording expenses, tracking tax and insurance contributions, managing the payroll, performing audits, reconciling accounts, and preparing financial statements.

The term "payroll" itself originated from medieval England, where stewards recorded employee names and salaries on "rolls" or parchments. With the advent of industrialization and income tax in 1799, more comprehensive systems became necessary for accurate documentation, solidifying the use of the term derived from "pay" (remunerating staff) and "roll" (periodical payment).

Gross Pay vs. Net Pay: The Core Distinction

Understanding the difference between gross pay and net pay is essential for both employees making financial decisions and employers managing payroll.

  • Gross Pay: This is the total amount of money an employee earns before subtracting any payroll deductions and taxes. It's the figure indicated on the employment contract. Gross pay can be a fixed annual salary (e.g., $60,000 annually) or a multiplication of the hourly wage rate with the number of working hours (e.g., $20 per hour for 40 hours/week equals $800 weekly gross pay). While it won't appear in the bank account, it's the starting point for all calculations.
  • Net Pay: This is the money an employee receives in their bank account after taxes, optional contributions, and other deductions have been subtracted. Net pay is more important than gross pay as it guides employees' financial activities. In rare cases, net pay may equal gross pay if income tax is negligible or the employee's salary falls below the government's taxation bracket.

Common Deductions from Gross Pay:

  • Taxes: Income taxes, federal income tax, state income tax, and other relevant national or local government taxes are subtracted.
  • Insurance: Contributions to national health funds, disability, social security, health insurance, and unemployment insurance are common.
  • Pension or Retirement Plan Contributions: A percentage of gross pay may be deducted for pension or retirement plans, with both employer and employee sometimes contributing.
  • Bonus Payments: While appreciation for excellent work, bonuses and other incentives are often subject to taxation.
  • Student Loan Payments: Some countries mandate that employers deduct student loan payments from employees' gross pay.
  • Workers' Union Contributions: If applicable, these are also deducted.

Key Differences Between Gross Pay and Net Pay:

  • Gross pay is always higher than net pay.
  • Gross pay accounts for all benefits paid by the employer, including overtime, holiday pay, and bonuses, while net income is exclusive of these benefits.
  • Gross pay is derived from the cost to the company (CTC), whereas net pay is what remains after subtracting taxes and deductions from gross income.
  • Gross pay is the figure agreed upon in the employment contract and is typically the highest figure on a payslip, while net pay is the final, lower amount received in the bank account, often displayed in a bigger font on the payslip.

Gross-Up: This refers to an amount an employer adds to an employee's payment to cover the income taxes the employee will owe for that payment. It helps employers relieve tax liability for things like bonuses or relocation expenses. For example, if $6,000 in relocation expenses is taxable, an employer might pay $9,000 to ensure the employee receives the full $6,000 benefit, with the extra $3,000 covering the tax.

Preparing Your Payroll System

Effective payroll begins with thorough preparation, including gathering employee information, choosing a suitable system, and establishing clear policies.

1. Gather Employee Information Before processing payroll, employers must collect crucial employee data:

  • Personal Details: Name, address, and social security or insurance numbers.
  • Banking Information: Bank account details for direct deposits.
  • Work Information: Role, worked hours, and salary rates.
  • Deduction Approvals: Official documentation for employee-approved deductions like medicare or retirement savings.
  • Incentives: Information on applicable bonuses or commissions.

2. Choose a Payroll System The choice of payroll system should align with factors such as business size, growth, employee benefits, and local tax/federal laws. There are four distinct types of payroll systems:

  • In-house Payroll: Managed internally by an employee or the business owner, suitable for small businesses with few employees and consistent working hours. Requires proper training in payroll practices and statutory laws. It can be economical for small businesses but may become challenging as the company grows.
  • Outsourced Payroll Solutions: Involves hiring an external firm specializing in payroll processing. This option is convenient for companies of any size and ideal for those without an in-house payroll employee. These agencies offer services like time tracking and tax filing, ensuring accuracy and compliance from trained finance professionals. However, it means sharing employee data and potentially adjusting internal processes to match the agency's.
  • Professionally Managed by Bookkeepers or CPAs: Employers can hire a professional bookkeeper or Certified Public Accountant (CPA) to manage payroll. This is popular among small and medium businesses lacking internal payroll resources, as these experts handle tax forms, prepare payroll, and offer valuable insights.
  • Software-Managed / Cloud-based Payroll: Increasingly popular, these systems are cloud-based, cost-effective, easy to use, and efficient. Payroll software, like Workpay, automates the processing, reduces human error, and generates comprehensive payroll reports and pay stubs. Data entry, time tracking, tax filing, calculations, and recordkeeping are all managed in the cloud.

3. Establish a Payroll Policy A defined payroll policy provides guidelines and regulations for how payroll processing should be carried out, ensuring transparency and that employees understand their rights. Key elements include:

  • Pay Dates: Dictates the length of the pay period (e.g., weekly, biweekly, monthly) and when employees should expect their salaries.
  • Payment Methods: Specifies how employees will receive their salaries (e.g., direct deposits, paychecks, mobile wallets).
  • Deductions: Outlines procedures for necessary deductions such as taxes and insurance, along with relevant regulations.
  • Benefits: Clearly states any employee benefits like overtime, tax exemptions, and leave payments.

Calculating Payroll: A Step-by-Step Guide

Once preparation is complete, the next crucial step is calculating each employee's salary accurately.

1. Calculate Gross Pay:

  • Salaried Employees: Divide the annual salary by the stipulated pay periods. For instance, an $84,000 annual salary paid monthly results in a $7,000 monthly gross pay.
  • Hourly Employees: Multiply the agreed hourly rate by the total number of hours worked in a given period. For example, $25 per hour for 40 hours a week yields a $1,000 weekly gross pay.

2. Account for All Mandatory and Voluntary Deductions:

  • Reference each employee's tax details and review the country's laws regarding tax withholdings.
  • Mandatory Deductions: These vary by country but commonly include income tax, social security contributions, health care premiums, and retirement plan payments.
  • Voluntary Deductions: These depend on employee preference and require their consent, such as additional retirement savings or union contributions.
  • Special Considerations:
    • Overtime: Money paid for extra hours worked, usually calculated separately and applicable only to eligible employees.
    • Incentives: Bonuses, allowances, commissions, and other benefits that vary by employer.
    • PTO Compensation: Paid leaves like holidays, vacations, sick leave, parental leave, maternity leave, and annual leave.
    • Employee Contributions to Social Securities’ Funds: Mandatory contributions for pension, health, housing, or disability insurance, remitted to the government.

3. Calculate Net Pay:

  • Sum up all mandatory and voluntary deductions.
  • Subtract the total deductions from the gross pay to arrive at the employee's net income. The formula is: Net Pay = Gross Pay - Payroll Deductions.

Withholding Calculation Methods:

  • Percentage Method: Withholding taxes based on predetermined percentage rates set by relevant authorities.
  • Wage Bracket Method: Finds its basis on an employee's income level.

Using a payroll calculator or automated payroll software can simplify calculations and ensure compliance with tax laws and regulations.

The Payroll Accounting Process in Africa

Payroll accounting is the structured recording and tracking of financial transactions related to employee compensation, sitting at the intersection of human resources, finance, and compliance. In Africa, where businesses are rapidly expanding, accurate payroll accounting forms the backbone of reliable financial reporting.

What Payroll Accounting Involves:

  • Employee's Gross Pay: Includes base salary, overtime pay, bonuses, and commissions.
  • Payroll Deductions: Mandatory withholdings like income tax and voluntary deductions such as retirement plan contributions or life insurance.
  • Payroll Liabilities: Employer's obligations, including insurance contributions and health insurance premiums.
  • Direct Labor and Employee Benefits: Costs associated with staff output and welfare.
  • Payroll Tax: State income tax, federal income tax, and related withholdings based on local tax laws and regulations.

Accuracy in payroll accounting is crucial for maintaining clean financial records, generating timely financial statements, and complying with evolving tax rules.

The Payroll Accounting Process:

  1. Initial recordings of employee wages and benefits.
  2. Staff payment entries into the general ledger and payroll journal.
  3. Tax withholdings and compliance with state and federal tax laws.
  4. Direct deposit or other payment methods (e.g., manual payments, mobile money).
  5. Reconciliation of bank statements and posting to the balance sheet.
  6. Review of the company’s chart of accounts to categorize salary payments as operational expenses or cost of goods sold.

These steps can be complex and time-consuming when performed manually, especially across multiple regions with differing payroll cycles and regulations.

Types of Payroll Accounting:

  • Accrual Payroll Accounting: Recognizes expenses in the accounting period when employees earn them, not when the cash is actually disbursed.
  • Cash Payroll Accounting: Records expenses only when cash is disbursed.
  • Manual vs. Automated Payroll Systems: Manual systems carry higher risks of errors and non-compliance, whereas automated systems or payroll accounting software offer greater accuracy and real-time processing capabilities.

Challenges with Traditional Payroll Operations in Africa: Managing salary disbursements in Africa presents unique challenges due to constantly changing tax rates, fragmented tax regulations, variations in minimum wage and benefits, and the burden of tracking diverse expenses and government contributions. Many small businesses still rely on spreadsheets or outdated tools that often don't integrate with their accounting software, leading to inconsistent data, missed deductions, and reporting delays.

Processing and Managing Payroll with Modern Solutions

Once calculations are accurate, the final stage involves processing and disbursing payments, followed by reporting and record-keeping.

1. Approve Payroll Before disbursing payments, companies must thoroughly review all calculations to prevent errors in employee payments.

2. Pay Employees Once verified and submitted, employees can be paid through various methods, including direct deposits, cash, mobile wallets, checks, prepaid cards, or pay cards.

3. Report and Update Payroll Records After payments are made, it's essential to update payroll records and review payroll data to generate reports for actionable insights and to track tax contributions.

4. Prepare Employee Payslips Payslips are crucial documents that outline an employee's pay for a given period, detailing all deductions, benefits, and net income, ensuring transparency and accuracy. Payroll software can automate payslip generation, ensuring correct information.

Processing Tools and Workpay's Role Modern processing tools connect to banks and other payment systems, simplifying the disbursement of salaries. Workpay is an HR and Payroll software company that offers a comprehensive automated system designed to streamline various tasks, from calculation, tax withholding, and deductions to generating paychecks and direct deposits. Workpay specializes in solutions for businesses across Africa.

How Workpay Enhances the Payroll Accounting Process in Africa:

  • End-to-End Salary Disbursement Management: Automates the entire payment cycle, from calculating an employee’s gross pay to submitting tax obligations, minimizing input from HR or finance.
  • Integrated System: Cloud-based HR and payroll software seamlessly integrates with major accounting software like QuickBooks and Xero, eliminating redundant entries and ensuring clean financial statements.
  • Real-Time Reporting and Compliance: Ensures full tax compliance with federal and state income tax filings. Tailored dashboards allow real-time tracking of overtime pay, insurance contributions, and tax withholdings per employee.
  • Direct Deposit and Employee Access: Employees receive payments via direct deposit and can access payslips, benefit summaries, and retirement plan contributions through a self-service portal.

Workpay serves a wide range of global and African businesses, from startups to multinationals, helping HR and finance teams align on multi-country salary payment operations, tracking salaries and bonuses, auto-calculating tax withholdings and health insurance, managing statutory obligations, maintaining consistent financial tracking for audit readiness, and generating clean payroll data. By automating compliance and streamlining financial reporting, Workpay aims to enhance employee well-being through timely, accurate payments.

Finally, employers should prioritize secure log-in procedures for payroll systems, using passwords, usernames, and multi-factor authentication to protect sensitive information. Staying updated with ever-changing payroll laws and regulations is also crucial. With the right tools and knowledge, managing payroll can be a seamless and efficient process for businesses in Africa.

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Workpay is a HR and Payroll software company that offers time & attendance, payroll, human resource, leave, expenses and remote teams solutions to businesses across Africa.

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